{ "_id": "6a141bd3acfb0bcc41d3d7e9", "Package": "monitoR", "Type": "Package", "Title": "Acoustic Template Detection in R", "Version": "1.2", "Date": "2025-04-10", "Authors@R": "c(person(given = c(\"Sasha\", \"D.\"),\nfamily = \"Hafner\",\nrole = c(\"aut\", \"cre\"),\nemail = \"sasha.hafner@bce.au.dk\",\ncomment = c(ORCID = \"0000-0003-0955-0327\")),\nperson(given = \"Jon\",\nfamily = \"Katz\",\nrole = \"aut\",\nemail = \"jonkatz4@gmail.com\"),\nperson(given = \"Jerome\",\nfamily = \"Sueur\",\nrole = \"aut\",\ncomment = \"seewave package author (code from Fourier transform used in monitoR)\"),\nperson(given = \"Thierry\",\nfamily = \"Aubin\",\nrole = \"aut\",\ncomment = \"seewave package author (code from Fourier transform used in monitoR)\"),\nperson(given = \"Caroline\",\nfamily = \"Simonis\",\nrole = \"aut\",\ncomment = \"seewave package author (code from Fourier transform used in monitoR)\"),\nperson(given = \"Uwe\",\nfamily = \"Ligges\",\nrole = \"aut\",\ncomment = \"tuneR package author (code from readMP3() used in monitoR)\"),\nperson(given = \"Therese\",\nfamily = \"Donovan\",\nrole = \"ctb\",\ncomment = \"creative direction and database design support\")\n)", "Maintainer": "Sasha D. Hafner ", "Description": "Acoustic template detection and monitoring database\ninterface. Create, modify, save, and use templates for\ndetection of animal vocalizations. View, verify, and extract\nresults. Upload a MySQL schema to a existing instance, manage\nsurvey metadata, write and read templates and detections\nlocally or to the database.", "License": "GPL-2", "URL": "https://github.com/jonkatz2/monitor", "VignetteBuilder": "knitr", "Repository": "https://jonkatz2.r-universe.dev", "Date/Publication": "2025-04-11 09:54:37 UTC", "RemoteUrl": "https://github.com/jonkatz2/monitor", "RemoteRef": "HEAD", "RemoteSha": "46136764123348e483bb37b5a220f9532f93c03e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-25 09:48:17 UTC", "User": "root" }, "Author": "Sasha D. Hafner [aut, cre] (ORCID:\n),\nJon Katz [aut],\nJerome Sueur [aut] (seewave package author (code from Fourier transform\nused in monitoR)),\nThierry Aubin [aut] (seewave package author (code from Fourier\ntransform used in monitoR)),\nCaroline Simonis [aut] (seewave package author (code from Fourier\ntransform used in monitoR)),\nUwe Ligges [aut] (tuneR package author (code from readMP3() used in\nmonitoR)),\nTherese Donovan [ctb] (creative direction and database design support)", "MD5sum": "715947cbdf548dfca9935be0d3a8fc2f", "_user": "jonkatz2", "_type": "src", "_file": "monitoR_1.2.tar.gz", "_fileid": "d625ea7d123e3c7d8e167190421fa63f67dc74d87fd297cbe38fa2989cc97df2", "_filesize": 4996980, "_sha256": "d625ea7d123e3c7d8e167190421fa63f67dc74d87fd297cbe38fa2989cc97df2", "_created": "2026-05-25T09:48:17.000Z", "_published": "2026-05-25T09:52:19.783Z", "_distro": "noble", "_jobs": [ { "job": 77691217886, "time": 122, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7195838488" }, { "job": 77691217917, "time": 124, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7195839244" }, { "job": 77691217880, "time": 196, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7195848167" }, { "job": 77691217872, "time": 149, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7195837652" }, { "job": 77690787477, "time": 196, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7195805449" }, { "job": 77691217864, "time": 98, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7195832034" }, { "job": 77691217937, "time": 128, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7195839827" }, { "job": 77691217884, "time": 101, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7195832853" }, { "job": 77691217893, "time": 91, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7195830481" } ], "_buildurl": "https://github.com/r-universe/jonkatz2/actions/runs/26394166311", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/jonkatz2/monitor", "_commit": { "id": "46136764123348e483bb37b5a220f9532f93c03e", "author": "Sasha D. Hafner ", "committer": "Sasha D. Hafner ", "message": "update NEWS to v1.2\n", "time": 1744365277 }, "_maintainer": { "name": "Sasha D. Hafner", "email": "sasha.hafner@bce.au.dk", "login": "sashahafner", "description": "", "uuid": 35272876, "orcid": "0000-0003-0955-0327" }, "_registered": true, "_dependencies": [ { "package": "tuneR", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "fftw", "role": "Suggests" }, { "package": "parallel", "role": "Suggests" }, { "package": "RODBC", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "jonkatz2", "_selfowned": true, "_usedby": 5, "_updates": [], "_tags": [], "_stars": 9, "_contributors": [ { "user": "sashahafner", "count": 30, "uuid": 35272876 }, { "user": "jonkatz2", "count": 8, "uuid": 6555189 } ], "_userbio": { "uuid": 6555189, "type": "user", "name": "Jon Katz" }, "_downloads": { "count": 646, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/monitoR" }, "_mentions": 2, "_devurl": "https://github.com/jonkatz2/monitor", "_searchresults": 105, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/monitoR.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/jonkatz2/monitor", "_realowner": "jonkatz2", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2014-03-27" }, { "version": "1.0.1", "date": "2014-03-31" }, { "version": "1.0.2", "date": "2014-05-14" }, { "version": "1.0.3", "date": "2015-04-23" }, { "version": "1.0.4", "date": "2015-09-18" }, { "version": "1.0.5", "date": "2017-02-17" }, { "version": "1.0.7", "date": "2018-02-14" }, { "version": "1.2", "date": "2025-04-11" } ], "_exports": [ "batchBinMatch", "batchCorMatch", "bindEvents", "binMatch", "changeSampRate", "collapseClips", "combineBinTemplates", "combineCorTemplates", "compareTemplates", "corMatch", "cutWave", "dbDownloadCardRecorderID", "dbDownloadResult", "dbDownloadSurvey", "dbDownloadTemplate", "dbSchema", "dbUploadAnno", "dbUploadResult", "dbUploadSurvey", "dbUploadTemplate", "eventEval", "fileCopyRename", "findPeaks", "getDetections", "getPeaks", "getTemplates", "gray.1", "gray.2", "gray.3", "makeBinTemplate", "makeCorTemplate", "mp3Subsamp", "rainbow.1", "readBinTemplates", "readCorTemplates", "readMP3", "show", "showPeaks", "templateComment", "templateComment<-", "templateCutoff", "templateCutoff<-", "templateNames", "templateNames<-", "templatePath", "templatePath<-", "timeAlign", "topo.1", "viewSpec", "writeBinTemplates", "writeCorTemplates" ], "_datasets": [ { "name": "btnw", "title": "Black-Throated Green Warbler (_Setophaga virens_) Song", "object": "btnw", "file": "btnw.rda", "class": [ "Wave" ], "fields": [], "table": false, "tojson": false }, { "name": "oven", "title": "Ovenbird (_Seiurus aurocapilla_) Song", "object": "oven", "file": "oven.rda", "class": [ "Wave" ], "fields": [], "table": false, "tojson": false }, { "name": "survey", "title": "Sample Acoustic Survey (Short)", "object": "survey", "file": "survey.rda", "class": [ "Wave" ], "fields": [], "table": false, "tojson": false }, { "name": "survey_anno", "title": "Annotations for 'survey'", "object": "survey_anno", "file": "survey_anno.rda", "class": [ "data.frame" ], "fields": [ "start.time", "end.time", "min.frq", "max.frq", "name" ], "rows": 7, "table": true, "tojson": true } ], "_help": [ { "page": "batchDetection", "title": "Batch Template Detection", "topics": [ "batchBinMatch", "batchCorMatch" ] }, { "page": "bindEvents", "title": "Summarize/Archive Manually Derived Sound Events", "topics": [ "bindEvents" ] }, { "page": "btnw", "title": "Black-Throated Green Warbler (_Setophaga virens_) Song", "topics": [ "btnw" ] }, { "page": "changeSampRate", "title": "Resample Wave objects", "topics": [ "changeSampRate" ] }, { "page": "collapseClips", "title": "Summarize/Archive Song Events", "topics": [ "collapseClips" ] }, { "page": "combineTemplates", "title": "Combine Acoustic Template Lists", "topics": [ "combineBinTemplates", "combineCorTemplates" ] }, { "page": "compareTemplates", "title": "Compare Performance of Templates", "topics": [ "compareTemplates" ] }, { "page": "cutWave", "title": "Extract Shorter Wave Objects from other Wave Objects", "topics": [ "cutWave" ] }, { "page": "dbDownload", "title": "Retrieve Card-Recorder ID Values or Survey Names from a Database", "topics": [ "dbDownloadCardRecorderID", "dbDownloadSurvey" ] }, { "page": "dbDownloadResult", "title": "Create 'detectionList' Objects from Data Stored in a Database", "topics": [ "dbDownloadResult" ] }, { "page": "dbDownloadTemplate", "title": "Retrieve templates from an acoustics database", "topics": [ "dbDownloadTemplate" ] }, { "page": "dbSchema", "title": "Upload a MySQL Database Schema to Create Tables in an Acoustics Database", "topics": [ "dbSchema" ] }, { "page": "dbUploadAnno", "title": "Upload Spectrogram Annotations to an Acoustics Database", "topics": [ "dbUploadAnno" ] }, { "page": "dbUploadResult", "title": "Upload Detection Results to an Acoustics Database", "topics": [ "dbUploadResult" ] }, { "page": "dbUploadSurvey", "title": "Upload Survey Metadata to an Acoustics Database", "topics": [ "dbUploadSurvey" ] }, { "page": "dbUploadTemplate", "title": "Upload Acoustic Templates to a Database", "topics": [ "dbUploadTemplate" ] }, { "page": "detectionList-class", "title": "Class '\"detectionList\"'", "topics": [ "detectionList-class" ] }, { "page": "eventEval", "title": "Evaluate Detected Events with Known Event Sources and Times", "topics": [ "eventEval" ] }, { "page": "index-methods", "title": "Indexing (Extraction) Methods for 'monitoR' Package", "topics": [ "[,detectionList-method", "[,TemplateList-method", "[,templateScores-method", "[-methods" ] }, { "page": "fileCopyRename", "title": "Copy and Rename Sound Files from Portable Media", "topics": [ "fileCopyRename" ] }, { "page": "findPeaks", "title": "Find Score Peaks and Detections in a 'templateScores' Object", "topics": [ "findPeaks" ] }, { "page": "getDetections", "title": "Extract Detections or Peaks from a 'detectionList' Object", "topics": [ "getDetections", "getPeaks" ] }, { "page": "getTemplates", "title": "Extract a Template List", "topics": [ "getTemplates" ] }, { "page": "makeTemplate", "title": "Make an Acoustic Template", "topics": [ "makeBinTemplate", "makeCorTemplate" ] }, { "page": "monitoR-package", "title": "Automated Acoustic Monitoring-overview and examples", "topics": [ "monitoR-package", "monitoR" ] }, { "page": "mp3Subsamp", "title": "Extract Short Surveys from Longer mp3 Recordings", "topics": [ "mp3Subsamp" ] }, { "page": "oven", "title": "Ovenbird (_Seiurus aurocapilla_) Song", "topics": [ "oven" ] }, { "page": "plot-methods", "title": "Methods for the 'plot' Function", "topics": [ "plot,detectionList,ANY-method", "plot,TemplateList,ANY-method", "plot-methods" ] }, { "page": "readMP3", "title": "Read MP3 Files into a Wave Object", "topics": [ "readMP3" ] }, { "page": "readTemplates", "title": "Read Acoustic Templates from a Local Disk", "topics": [ "readBinTemplates", "readCorTemplates" ] }, { "page": "show-methods", "title": "Methods for the 'show' and 'summary' Functions", "topics": [ "show,binTemplateList-method", "show,corTemplateList-method", "show,detectionList-method", "show,templateScores-method", "show-methods", "summary,binTemplateList-method", "summary,corTemplateList-method", "summary,detectionList-method", "summary,TemplateList-method", "summary,templateScores-method", "summary-methods" ] }, { "page": "showPeaks", "title": "View or Verify Detections or Peaks", "topics": [ "showPeaks" ] }, { "page": "specCols", "title": "Color Vectors for Spectrograms", "topics": [ "gray.1", "gray.2", "gray.3", "rainbow.1", "specCols", "topo.1" 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